.. image:: ../images/pVACfuse_logo_trans-bg_sm_v4b.png :align: right :alt: pVACfuse logo Getting Started --------------- pVACfuse provides a set of example data to show the expected format of input and output files. You can download the data set by running the ``pvacfuse download_example_data`` :ref:`command `. The AGFusion example data output can be reproduced by running the following command: .. code-block:: none pvacfuse run \ /agfusion/ \ Test \ HLA-A*02:01,HLA-B*35:01,DRB1*11:01 \ all \ \ -e1 8,9,10 \ -e2 15 The Arriba example data output can be reproduced by running the following command: .. code-block:: none pvacfuse run \ /arriba_fusions.tsv \ Test \ HLA-A*02:01,HLA-B*35:01,DRB1*11:01 \ all \ \ -e1 8,9,10 \ -e2 15 A detailed description of all command options can be found on the :ref:`Usage ` page.