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Additional Commands

To make using pVACfuse easier, several convenience methods are included in the package.

Download Example Data

usage: pvacfuse download_example_data [-h] destination_directory

positional arguments:
  destination_directory
                        Directory for downloading example data

optional arguments:
  -h, --help            show this help message and exit

List Valid Alleles

usage: pvacfuse valid_alleles [-h]
                              [-p {NNalign,NetMHC,NetMHCIIpan,NetMHCcons,NetMHCpan,PickPocket,SMM,SMMPMBEC,SMMalign}]

optional arguments:
  -h, --help            show this help message and exit
  -p {NNalign,NetMHC,NetMHCIIpan,NetMHCcons,NetMHCpan,PickPocket,SMM,SMMPMBEC,SMMalign}, --prediction-algorithm {NNalign,NetMHC,NetMHCIIpan,NetMHCcons,NetMHCpan,PickPocket,SMM,SMMPMBEC,SMMalign}
                        The epitope prediction algorithms to use