.. image:: images/pVACfuse_logo_trans-bg_sm_v4b.png :align: right :alt: pVACfuse logo .. _pvacfuse: pVACfuse ==================================== This component of the pVACtools workflow provides support for predicting neoantigens from gene fusions. Currently, annotated fusion variants as reported by `AGFusion `_ and `Arriba `_ are supported, and any of the binding affinity prediction software available in pVACseq can be used for binding prediction. .. toctree:: :glob: pvacfuse/features pvacfuse/prerequisites pvacfuse/getting_started pvacfuse/run pvacfuse/output_files pvacfuse/filter_commands pvacfuse/additional_commands pvacfuse/optional_downstream_analysis_tools