.. image:: ../images/pVACview_logo_trans-bg_sm_v4b.png
    :align: right
    :alt: pVACview logo

.. _neofox_module:

Neofox Module
---------------

`NeoFox (NEOantigen Feature toolbOX) <https://neofox.readthedocs.io/en/latest/index.html>`_ 
is a python package that annotates a 
given set of neoantigen candidate sequences with relevant neoantigen features.
The tool covers neoepitope prediction by MHC binding and ligand prediction,
similarity/foreignness of a neoepitope candidate sequence, combinatorial
features and machine learning approaches by running a wide range of published
toolsets on the given input data.

.. toctree::
   :maxdepth: 2
   :glob:

   neofox_module/neofox_upload
   neofox_module/neofox_features