Additional Commands

To make using pVACseq easier, several convenience methods are included in the package.

Download Example Data

usage: pvacseq download_example_data [-h] destination_directory

Download example input and output files

positional arguments:
  destination_directory
                        Directory for downloading example data

optional arguments:
  -h, --help            show this help message and exit

Install VEP Plugin

usage: pvacseq install_vep_plugin [-h] vep_plugins_path

Install the Wildtype and Frameshift VEP plugins into your VEP_plugins
directory

positional arguments:
  vep_plugins_path  Path to your VEP_plugins directory

optional arguments:
  -h, --help        show this help message and exit