Version 4.1

Version 4.1.0

This is a minor feature release. It adds the following features:

• This release adds support for two new prediction algorithms: BigMHC and DeepImmuno (#1063). BigMHC includes predictions for elution (BigMHC_EL) and immunogenicity (BigMHC_IM). DeepImmuno is a prediction algorithms for immunogenicty.

• This release includes several updates to pVACview (#1012):

  • The tab containing the anchor heatmaps for each well-binding peptide of a variant has been moved to the “Transcript and Peptide Set Data” panel.

  • The anchor heatmap tab now also contains a table of all the per-length and per-allele anchor weights for each position in a peptide.

  • The pVACtools version is now displayed at the bottom of the sidebar.

  • A new panel has been added to show the tiering parameters currently applied.

  • Where there are multiple transcript sets for a variant, the one containing the best peptide is now selected by default.

• This release adds a new command pvactools download_wdls (#1055). This command can be used to download WDL workflow files for pVACseq and pVACfuse.