.. image:: ../images/pVACfuse_logo_trans-bg_sm_v4b.png :align: right :alt: pVACfuse logo Additional Commands =================== To make using pVACfuse easier, several convenience methods are included in the package. .. _pvacfuse_example_data: Download Example Data --------------------- .. program-output:: pvacfuse download_example_data -h .. .. argparse:: :module: lib.download_example_data :func: define_parser :prog: pvacfuse download_example_data List Valid Alleles ------------------ .. program-output:: pvacfuse valid_alleles -h .. .. argparse:: :module: lib.valid_alleles :func: define_parser :prog: pvacfuse valid_alleles List Allele-Specific Cutoffs ---------------------------- .. program-output:: pvacfuse allele_specific_cutoffs -h