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Getting StartedΒΆ

pVACfuse provides a set of example data to show the expected input and output files. You can download the data set by running the pvacfuse download_example_data command.

The example data output can be reproduced by running the following command:

pvacfuse run \
<example_data_dir>/fusions.bedpe.annot \
Test \
HLA-A*29:02 \
NetMHC \
<output_dir> \
-e 9 \
--top-score-metric=lowest --keep-tmp-files

A detailed description of all command options can be found on the Usage page.