Version 6.1¶
Version 6.1.0¶
This is a minor version release. It adds the following features:
Add ability to change port to serve pVACview to (
--portparameter). by @susannasiebert in https://github.com/griffithlab/pVACtools/pull/1354Add a
pvacseq|fuse|bind|splice aggregate_report_filtercommand to filter aggregated report on variant Tier. by @susannasiebert in https://github.com/griffithlab/pVACtools/pull/1368Add a
--lengthparameter to thepvacseq|fuse|splice|bind|vector valid_allelescommands to filter alleles to ones that work for a specific epitope length. by @susannasiebert in https://github.com/griffithlab/pVACtools/pull/1372Clarify help texts to differentiate between hard filtering and prioritizing/tiering. by @susannasiebert in https://github.com/griffithlab/pVACtools/pull/1373
Add codemeta.json file to repo. by @susannasiebert in https://github.com/griffithlab/pVACtools/pull/1374
Additionally, it fixes the following problem(s):
Fix an error in the output parser that occurs with very long insertions. by @CSi-Ti in https://github.com/griffithlab/pVACtools/pull/1367
Support splice site with multiple matching somatic variants that would previously throw an error. by @susannasiebert in https://github.com/griffithlab/pVACtools/pull/1369
Version 6.1.1¶
This is a bugfix release. It fixes the following problem(s):
Revert accidental tdna-cov parameter default value change. by @susannasiebert in https://github.com/griffithlab/pVACtools/pull/1388
Add missing pvacsplice.wdl to download_wdls command. by @susannasiebert in https://github.com/griffithlab/pVACtools/pull/1389
Fix top score filter to work with presentation/immunogenicity-only reports. by @susannasiebert in https://github.com/griffithlab/pVACtools/pull/1391
Replace deprecated pkg_resources with importlib.metadata. by @susannasiebert in https://github.com/griffithlab/pVACtools/pull/1392