Version 6.1

Version 6.1.0

This is a minor version release. It adds the following features:

• Add ability to change port to serve pVACview to (--port parameter). by @susannasiebert in https://github.com/griffithlab/pVACtools/pull/1354

• Add a pvacseq|fuse|bind|splice aggregate_report_filter command to filter aggregated report on variant Tier. by @susannasiebert in https://github.com/griffithlab/pVACtools/pull/1368

• Add a --length parameter to the pvacseq|fuse|splice|bind|vector valid_alleles commands to filter alleles to ones that work for a specific epitope length. by @susannasiebert in https://github.com/griffithlab/pVACtools/pull/1372

• Clarify help texts to differentiate between hard filtering and prioritizing/tiering. by @susannasiebert in https://github.com/griffithlab/pVACtools/pull/1373

• Add codemeta.json file to repo. by @susannasiebert in https://github.com/griffithlab/pVACtools/pull/1374

Additionally, it fixes the following problem(s):

• Fix an error in the output parser that occurs with very long insertions. by @CSi-Ti in https://github.com/griffithlab/pVACtools/pull/1367

• Support splice site with multiple matching somatic variants that would previously throw an error. by @susannasiebert in https://github.com/griffithlab/pVACtools/pull/1369

Version 6.1.1

This is a bugfix release. It fixes the following problem(s):

• Revert accidental tdna-cov parameter default value change. by @susannasiebert in https://github.com/griffithlab/pVACtools/pull/1388

• Add missing pvacsplice.wdl to download_wdls command. by @susannasiebert in https://github.com/griffithlab/pVACtools/pull/1389

• Fix top score filter to work with presentation/immunogenicity-only reports. by @susannasiebert in https://github.com/griffithlab/pVACtools/pull/1391

• Replace deprecated pkg_resources with importlib.metadata. by @susannasiebert in https://github.com/griffithlab/pVACtools/pull/1392