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Neofox ModuleΒΆ

NeoFox (NEOantigen Feature toolbOX) is a python package that annotates a given set of neoantigen candidate sequences with relevant neoantigen features. The tool covers neoepitope prediction by MHC binding and ligand prediction, similarity/foreignness of a neoepitope candidate sequence, combinatorial features and machine learning approaches by running a wide range of published toolsets on the given input data.